Construction and validation of over-expression of RE1-silencing transcription factor (REST) using PiggyBac transposon inducible vector system in HEK293FT cells
DOI:
https://doi.org/10.31117/neuroscirn.v9i2.509Keywords:
PiggyBac, RE1-Silencing Transcription Factor (REST), Molecular cloning, TransfectionAbstract
RE1-silencing transcription factor (REST), a key regulator of neural gene expression, modulates ion channel function, neurotransmitter receptor activity, and synaptic plasticity, and its dysregulation has been implicated in neurodegenerative diseases. However, stable overexpression of REST in mammalian cells remains technically challenging, highlighting the need for an efficient and controllable delivery platform. Here, we constructed and validated a PiggyBac-based inducible vector system for regulatable REST overexpression in HEK293FT cells as a proof of concept. The REST-FLAG-P2A-GFP construct was assembled using NEBuilder HiFi DNA Assembly and validated by restriction fragment length polymorphism (RFLP), Sanger sequencing, and whole-plasmid sequencing. HEK293FT cells were transfected with REST-FLAG-P2A-GFP and SB100X, together with Xlone_GFP plasmids, using polyethylenimine (PEI), followed by doxycycline induction at 24 and 48 hours post-transfection. REST expression was confirmed by eGFP fluorescence imaging, while blasticidin resistance supported stable transgene integration for up to 5 days. Western blot analysis further verified inducible REST overexpression, detecting REST protein at approximately 130 and 200 kDa, with 1.45-fold (p < 0.01) and 1.56-fold (p < 0.05) increases, respectively, compared with uninduced cells. Collectively, these findings demonstrate the utility of the PiggyBac transposon system for stable and inducible expression of transcription factors in mammalian cells and establish a platform for future studies of REST function and gene regulatory mechanisms.
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References
Ballas, N., Grunseich, C., Lu, D. D., Speh, J. C., & Mandel, G. (2005). REST and its corepressors mediate plasticity of neuronal gene chromatin throughout neurogenesis. Cell, 121(4), 645–657. https://doi.org/10.1016/j.cell.2005.03.013
Cavadas, M. A. S., Mesnieres, M., Crifo, B., Manresa, M. C., Selfridge, A. C., Keogh, C. E., Fabian, Z., Scholz, C. C., Nolan, K. A., Rocha, S., Tambuwala, M. M., Cummins, E. P., & Taylor, C. T. (2015). REST mediates resolution of HIF-dependent gene expression in prolonged hypoxia. Scientific Reports, 5, 17851. https://doi.org/10.1038/srep17851
Chen, G. L., & Miller, G. M. (2013). Extensive alternative splicing of the repressor element silencing transcription factor linked to cancer. PLoS ONE, 8(4), e62217. https://doi.org/10.1371/journal.pone.0062217
Chen, G. L., & Miller, G. M. (2018). Alternative REST splicing underappreciated. ENeuro, 5(5), ENEURO.0034-18.2018. https://doi.org/10.1523/eneuro.0034-18.2018
Chen, Y. H., Keiser, M. S., & Davidson, B. L. (2018). Viral vectors for gene transfer. Current Protocols in Mouse Biology, 8(4), e58. https://doi.org/10.1002/cpmo.58
Chong, J. A., Tapia-Ramirez, J., Kim, S., Toledo-Aral, J. J., Zheng, Y., Boutros, M. C., Altshuller, Y. M., Frohman, M. A., Kraner, S. D., & Mandel, G. (1995). REST: A mammalian silencer protein that restricts sodium channel gene expression to neurons. Cell, 80(6), 949–957. https://doi.org/10.1016/0092-8674(95)90298-8
Donnelly, M. L. L., Hughes, L. E., Luke, G., Mendoza, H., Ten Dam, E., Gani, D., & Ryan, M. D. (2001). The “cleavage” activities of foot-and-mouth disease virus 2A site-directed mutants and naturally occurring “2A-like” sequences. The Journal of General Virology, 82(5), 1027–1041. https://doi.org/10.1099/0022-1317-82-5-1027
Doudna, J. A., & Charpentier, E. (2014). Genome editing. The new frontier of genome engineering with CRISPR-Cas9. Science, 346(6213), 1258096. https://doi.org/10.1126/science.1258096
Fong, J. H. C., & Ceroni, F. (2025). Transgene integration in mammalian cells: The tools, the challenges, and the future. Cell Systems, 16(12), 101426. https://doi.org/10.1016/j.cels.2025.101426
Golosova, O., Henderson, R., Vaskin, Y., Gabrielian, A., Grekhov, G., Nagarajan, V., Oler, A. J., Quiñones, M., Hurt, D., Fursov, M., & Huyen, Y. (2014). Unipro UGENE NGS pipelines and components for variant calling, RNA-seq and ChIP-seq data analyses. PeerJ, 2(1), e644. https://doi.org/10.7717/peerj.644
Gwon, L. W., Badon, I. W., Lee, Y., et al. (2025). Advances in large-scale DNA engineering with the CRISPR system. Experimental & Molecular Medicine, 57, 1902–1912. https://doi.org/10.1038/s12276-025-01530-0
Guo, X.-Y., Gao, X.-D., & Fujita, M. (2021). Sulfation of a FLAG tag mediated by SLC35B2 and TPST2 affects antibody recognition. PLoS ONE, 16(5),0250805. https://doi.org/10.1371/journal.pone.0250805
Hackett, P. B., Largaespada, D. A., & Cooper, L. J. N. (2010). A transposon and transposase system for human application. Molecular Therapy, 18(4), 674–683. https://doi.org/10.1038/mt.2010.2
Hsu, P. D., Lander, E. S., & Zhang, F. (2014). Development and applications of CRISPR-Cas9 for genome engineering. Cell, 157(6), 1262–1278. https://doi.org/10.1016/j.cell.2014.05.010
Hughes, R. A., & Ellington, A. D. (2017). Synthetic DNA synthesis and assembly: Putting the synthetic in synthetic biology. Cold Spring Harbor Perspectives in Biology, 9(1), a023812. https://doi.org/10.1101/cshperspect.a023812
Hunter, M. R., Grimsey, N. L., & Glass, M. (2016). Sulfation of the FLAG epitope is affected by co-expression of G protein-coupled receptors in a mammalian cell model. Scientific Reports, 6, 27316. https://doi.org/10.1038/srep27316
Indo, S., Orellana-Serradell, O., Torres, M. J., Castellón, E. A., & Contreras, H. R. (2024). Overexpression of REST represses the epithelial–mesenchymal transition process and decreases the aggressiveness of prostate cancer cells. International Journal of Molecular Sciences, 25(6), 3332. https://doi.org/10.3390/ijms25063332
Ivics, Z., Li, M. A., Mátés, L., Boeke, J. D., Nagy, A., Bradley, A., & Izsvák, Z. (2009). Transposon-mediated genome manipulation in vertebrates. Nature Methods, 6(6), 415–422. https://doi.org/10.1038/nmeth.1332
Kalva, S., Boeke, J. D., & Mita, P. (2018). Gibson deletion: A novel application of isothermal in vitro recombination. Biological Procedures Online, 20(1), 2. https://doi.org/10.1186/s12575-018-0068-7
Kaufman, W. L., Kocman, I., Agrawal, V., Rahn, H. P., Besser, D., & Gossen, M. (2008). Homogeneity and persistence of transgene expression by omitting antibiotic selection in cell line isolation. Nucleic Acids Research, 36(17), e111. https://doi.org/10.1093/nar/gkn508
Kim, J. H., Lee, S.-R., Li, L.-H., Park, H.-J., Park, J.-H., Lee, K. Y., Kim, M.-K., Shin, B. A., & Choi, S.-Y. (2011). High cleavage efficiency of a 2A peptide derived from porcine teschovirus-1 in human cell lines, zebrafish and mice. PLoS ONE, 6(4), e18556. https://doi.org/10.1371/journal.pone.0018556
Knappik, A., & Plückthun, A. (1994). An improved affinity tag based on the FLAG peptide for the detection and purification of recombinant antibody fragments. BioTechniques, 17(4), 754–761.
Lacoste, A., Berenshteyn, F., & Brivanlou, A. H. (2009). An efficient and reversible transposable system for gene delivery and lineage-specific differentiation in human embryonic stem cells. Cell Stem Cell, 5(3), 332–342. https://doi.org/10.1016/j.stem.2009.07.011
Lee, J. H., Chai, Y. G., & Hersh, L. B. (2000). Expression patterns of mouse repressor element-1 silencing transcription factor 4 (REST4) and its possible function in neuroblastoma. Journal of Molecular Neuroscience, 15(3), 205–214. https://doi.org/10.1385/jmn:15:3:205
Lehner, P. J. (2025). Silencing by the HUSH epigenetic transcriptional repressor complex. Annual Review of Biochemistry, 94(1), 361–386. https://doi.org/10.1146/annurev-biochem-020425-045352
Li, R., Zhuang, Y., Han, M., Xu, T., & Wu, X. (2013). PiggyBac as a high-capacity transgenesis and gene-therapy vector in human cells and mice. DMM Disease Models and Mechanisms, 6(3), 828–833. https://doi.org/10.1242/dmm.010827
Lim, C. T., Lim, C. W., Huang, T., Ismail, E. N., Reisi, P., Cheah, P. S., & Ling, K. H. (2025). The regulatory roles of REST in the synaptic development, function and related neurological disorders. Journal of Neurochemistry, 169(6), e70132. https://doi.org/10.1111/jnc.70132
Liu, X., Yan, J., Liu, F., Zhou, P., Lv, X., Cheng, N., & Liu, L. (2022). Overexpression of REST Causes neuronal injury and decreases cofilin phosphorylation in mice. Journal of Alzheimer’s Disease, 87(2), 873–886. https://doi.org/10.3233/jad-210285
Lu, T., Aron, L., Zullo, J., Pan, Y., Kim, H., Chen, Y., Yang, T. H., Kim, H. M., Drake, D., Liu, X. S., Bennett, D. A., Colaiácovo, M. P., & Yankner, B. A. (2014). REST and stress resistance in ageing and Alzheimer’s disease. Nature, 507(7493), 448–454. https://doi.org/10.1038/nature13163
Matasci, M., Bachmann, V., Baldi, L., Hacker, D. L., De Jesus, M., & Wurm, F. M. (2011). CHO cell lines generated by PiggyBac transposition. BMC Proceedings, 5(8), 1–2. https://doi.org/10.1186/1753-6561-5-s8-p31
Mátés, L., Chuah, M. K. L., Belay, E., Jerchow, B., Manoj, N., Acosta-Sanchez, A., Grzela, D. P., Schmitt, A., Becker, K., Mátrai, J., Ma, L., Samara-Kuko, E., Gysemans, C., Pryputniewicz, D., Miskey, C., Fletcher, B., VandenDriessche, T., Ivics, Z., & Izsvák, Z. (2009). Molecular evolution of a novel hyperactive Sleeping Beauty transposase enables robust stable gene transfer in vertebrates. Nature Genetics, 41(6), 753–761. https://doi.org/10.1038/ng.343
McInerney, P., Adams, P., & Hadi, M. Z. (2014). Error rate comparison during polymerase chain reaction by DNA polymerase. Molecular Biology International, 2014(1), 287430. https://doi.org/10.1155/2014/287430
Meyer, K., Feldman, H. M., Lu, T., Drake, D., Lim, E. T., Ling, K. H., Bishop, N. A., Pan, Y., Seo, J., Lin, Y. T., Su, S. C., Church, G. M., Tsai, L. H., & Yankner, B. A. (2019). REST and neural gene network dysregulation in iPSC models of Alzheimer’s disease. Cell Reports, 26(5), 1112-1127.e9. https://doi.org/10.1016/J.CELREP.2019.01.023
Nakazawa, Y., Saha, S., Galvan, D. L., Huye, L. E., Dotti, G., Foster, A. E., Vera, J. F., Manuri, P. R., June, C. H., Rooney, C. M., Wilson, M. H., & Savoldo, B. (2013). Evaluation of long-term transgene expression in piggyBac-modified human T lymphocytes. Journal of Immunotherapy, 36(1), 3–10. https://doi.org/10.1097/CJI.0b013e3182791234
Nechiporuk, T., McGann, J., Mullendorff, K., Hsieh, J., Wurst, W., Floss, T., & Mandel, G. (2016). The REST remodeling complex protects genomic integrity during embryonic neurogenesis. eLife, 5, e09584. https://doi.org/10.7554/elife.09584
Okonechnikov, K., Golosova, O., Fursov, M., Varlamov, A., Vaskin, Y., Efremov, I., German Grehov, O. G., Kandrov, D., Rasputin, K., Syabro, M., & Tleukenov, T. (2012). Unipro UGENE: a unified bioinformatics toolkit. Bioinformatics, 28(8), 1166–1167. https://doi.org/10.1093/bioinformatics/bts091
Parekh, U., Wu, Y., Zhao, D., Worlikar, A., Shah, N., Zhang, K., & Mali, P. (2018). Mapping cellular reprogramming via pooled overexpression screens with paired fitness and single-cell RNA-sequencing readout. Cell Systems, 7(5), 548–555.e8. https://doi.org/10.1016/j.cels.2018.10.008
Perycz, M., Dabrowski, M. J., Jardanowska-Kotuniak, M., Roura, A. J., Gielniewski, B., Stepniak, K., Dramiński, M., Ciechomska, I. A., Kaminska, B., & Wojtas, B. (2024). Comprehensive analysis of the REST transcription factor regulatory networks in IDH mutant and IDH wild-type glioma cell lines and tumors. Acta Neuropathologica Communications, 12(1), 1–29. https://doi.org/10.1186/s40478-024-01779-y
Randolph, L. N., Bao, X., Zhou, C., & Lian, X. (2017). An all-in-one, Tet-On 3G inducible PiggyBac system for human pluripotent stem cells and derivatives. Scientific Reports, 7(1), 1–8. https://doi.org/10.1038/s41598-017-01684-6
Rose, R., Golosova, O., Sukhomlinov, D., Tiunov, A., & Prosperi, M. (2019). Flexible design of multiple metagenomics classification pipelines with UGENE. Bioinformatics, 35(11), 1963–1965. https://doi.org/10.1093/bioinformatics/bty901
Sandoval-Villegas, N., Nurieva, W., Amberger, M., & Ivics, Z. (2021). Contemporary transposon tools: A review and guide through mechanisms and applications of Sleeping Beauty, piggyBac and Tol2 for genome engineering. International Journal of Molecular Sciences, 22(10), 5084. https://doi.org/10.3390/ijms22105084
Schmidt, P. M., Sparrow, L. G., Attwood, R. M., Xiao, X., Adams, T. E., & McKimm-Breschkin, J. L. (2012). Taking down the FLAG! How insect cell expression challenges an established tag-system. PLoS ONE, 7(6), e37779. https://doi.org/10.1371/journal.pone.0037779
Tan, E., Chin, C. S., Lim, Z. F. S., Ng, S. K., & Hew, C. L. (2021). HEK293 cell line as a platform to produce recombinant proteins and viral vectors. Frontiers in Bioengineering and Biotechnology, 9, 796991. https://doi.org/10.3389/fbioe.2021.796991
Thompson, J. R., Marcelino, L. A., & Polz, M. F. (2002). Heteroduplexes in mixed-template amplifications: Formation, consequence and elimination by “reconditioning PCR”. Nucleic Acids Research, 30(9), 2083–2088. https://doi.org/10.1093/nar/30.9.2083
Turchiano, G., Andrieux, G., Klermund, J., Blattner, G., Pennucci, V., El Gaz, M., Monaco, G., Poddar, S., Mussolino, C., Cornu, T. I., & Cathomen, T. (2014). Genomic analysis of Sleeping Beauty transposon integration in human somatic cells. PLoS ONE, 9(11), e112712. https://doi.org/10.1371/journal.pone.0112712
Wilber, A., Linehan, J. L., Tian, X., Woll, P. S., Morris, J. K., Belur, L. R., McIvor, R. S., & Kaufman, D. S. (2007). Efficient and stable transgene expression in human embryonic stem cells using transposon-mediated gene transfer. Stem Cells, 25(11), 2919–2927. https://doi.org/10.1634/stemcells.2007-0026
Wilson, M. H., Coates, C. J., & George, A. L., Jr. (2007). PiggyBac transposon-mediated gene transfer in human cells. Molecular Therapy, 15(1), 139–145. https://doi.org/10.1038/sj.mt.6300028
Wu, S. C. Y., Meir, Y. J. J., Coates, C. J., Handler, A. M., Pelczar, P., Moisyadi, S., & Kaminski, J. M. (2006). PiggyBac is a flexible and highly active transposon as compared to Sleeping Beauty, Tol2, and Mos1 in mammalian cells. Proceedings of the National Academy of Sciences of the United States of America, 103(41), 15008–15013. https://doi.org/10.1073/pnas.0606979103
Zhang, P., Casaday-Potts, R., Precht, P., Jiang, H., Liu, Y., Pazin, M. J., & Mattson, M. P. (2011). Nontelomeric splice variant of telomere repeat-binding factor 2 maintains neuronal traits by sequestering repressor element 1-silencing transcription factor. Proceedings of the National Academy of Sciences of the United States of America, 108(39), 16434–16439. https://doi.org/10.1073/pnas.1106906108
Zhao, S., Jiang, E., Chen, S., Gu, Y., Shangguan, A. J., Lv, T., Luo, L., & Yu, Z. (2016). PiggyBac transposon vectors: the tools of the human gene encoding. Translational Lung Cancer Research, 5(1), 120. https://doi.org/10.3978/J.ISSN.2218-6751.2016.01.05
Zhao, Y., Zhu, M., Yu, Y., Qiu, L., Zhang, Y., He, L., & Zhang, J. (2017). Brain REST/NRSF is not only a silent repressor but also an active protector. Molecular Neurobiology, 54(1), 541–550. https://doi.org/10.1007/S12035-015-9658-4
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